In [ ]:
!pip install -q kaggle
!mkdir -p ~/.kaggle
!cp kaggle.json ~/.kaggle/
!chmod 600 ~/.kaggle/kaggle.json
!kaggle datasets download -d lavaman151/plantifydr-dataset
Dataset URL: https://www.kaggle.com/datasets/lavaman151/plantifydr-dataset License(s): copyright-authors Downloading plantifydr-dataset.zip to /content ... resuming from 951058432 bytes (1817094495 bytes left) ... 100% 2.58G/2.58G [01:34<00:00, 23.8MB/s] 100% 2.58G/2.58G [01:34<00:00, 19.2MB/s]
In [ ]:
!unzip plantifydr-dataset.zip
Streaming output truncated to the last 5000 lines.
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In [ ]:
from pathlib import Path
path = Path('/content/PlantDiseasesDataset')
In [ ]:
[x for x in path.iterdir() if x.is_dir()]
Out[ ]:
[PosixPath('/content/PlantDiseasesDataset/Peach'),
PosixPath('/content/PlantDiseasesDataset/Citrus'),
PosixPath('/content/PlantDiseasesDataset/Strawberry'),
PosixPath('/content/PlantDiseasesDataset/Grape'),
PosixPath('/content/PlantDiseasesDataset/Bell pepper'),
PosixPath('/content/PlantDiseasesDataset/Tomato'),
PosixPath('/content/PlantDiseasesDataset/Corn'),
PosixPath('/content/PlantDiseasesDataset/Potato'),
PosixPath('/content/PlantDiseasesDataset/Cherry'),
PosixPath('/content/PlantDiseasesDataset/Apple')]
In [ ]:
from fastai.vision.all import *
In [ ]:
plant_list = ['Apple','Bell pepper','Cherry','Citrus','Corn','Grape','Peach','Potato','Strawberry','Tomato']
plant = 'Apple'
In [ ]:
model_path = Path(path/plant)
batch_tfms=[Normalize.from_stats(*imagenet_stats)]
In [ ]:
dls = ImageDataLoaders.from_folder(path/plant,train='train',valid_pct=0.2,seed=1000,item_tfms=Resize(224),
batch_tfms=batch_tfms,bs=128)
dls.show_batch(figsize=(15,15))
In [ ]:
f1 = F1Score(average='weighted')
mcc = MatthewsCorrCoef()
learn = cnn_learner(dls, models.resnet50,loss_func=LabelSmoothingCrossEntropy(),metrics=[accuracy,f1,mcc],
cbs=[SaveModelCallback(monitor='accuracy'),EarlyStoppingCallback(monitor='accuracy',patience=2)
,ShowGraphCallback()],model_dir=model_path/'models').to_fp16()
learn.fit_one_cycle(20)
/usr/local/lib/python3.10/dist-packages/fastai/vision/learner.py:303: UserWarning: `cnn_learner` has been renamed to `vision_learner` -- please update your code
warn("`cnn_learner` has been renamed to `vision_learner` -- please update your code")
Downloading: "https://download.pytorch.org/models/resnet50-11ad3fa6.pth" to /root/.cache/torch/hub/checkpoints/resnet50-11ad3fa6.pth
100%|██████████| 97.8M/97.8M [00:00<00:00, 143MB/s]
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.autocast(args...)` is deprecated. Please use `torch.amp.autocast('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.GradScaler(args...)` is deprecated. Please use `torch.amp.GradScaler('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
| epoch | train_loss | valid_loss | accuracy | f1_score | matthews_corrcoef | time |
|---|---|---|---|---|---|---|
| 0 | 0.953036 | 0.596956 | 0.952128 | 0.952086 | 0.935655 | 01:07 |
| 1 | 0.705082 | 0.520564 | 0.977204 | 0.977073 | 0.969503 | 01:03 |
| 2 | 0.600823 | 0.464476 | 0.988982 | 0.988963 | 0.985166 | 01:03 |
| 3 | 0.529691 | 0.432910 | 0.990502 | 0.990486 | 0.987213 | 01:07 |
| 4 | 0.466239 | 0.405585 | 0.991261 | 0.991229 | 0.988277 | 01:05 |
| 5 | 0.424791 | 0.389748 | 0.994681 | 0.994674 | 0.992840 | 01:03 |
| 6 | 0.405014 | 0.383622 | 0.995821 | 0.995819 | 0.994376 | 01:03 |
| 7 | 0.394146 | 0.379881 | 0.994681 | 0.994676 | 0.992837 | 01:02 |
| 8 | 0.386973 | 0.375968 | 0.995821 | 0.995817 | 0.994371 | 01:03 |
Better model found at epoch 0 with accuracy value: 0.9521276354789734.
Better model found at epoch 1 with accuracy value: 0.9772036671638489. Better model found at epoch 2 with accuracy value: 0.9889817833900452. Better model found at epoch 3 with accuracy value: 0.9905015230178833. Better model found at epoch 4 with accuracy value: 0.9912614226341248. Better model found at epoch 5 with accuracy value: 0.9946808218955994. Better model found at epoch 6 with accuracy value: 0.9958206415176392. No improvement since epoch 6: early stopping
/usr/local/lib/python3.10/dist-packages/fastai/learner.py:53: FutureWarning: You are using `torch.load` with `weights_only=False` (the current default value), which uses the default pickle module implicitly. It is possible to construct malicious pickle data which will execute arbitrary code during unpickling (See https://github.com/pytorch/pytorch/blob/main/SECURITY.md#untrusted-models for more details). In a future release, the default value for `weights_only` will be flipped to `True`. This limits the functions that could be executed during unpickling. Arbitrary objects will no longer be allowed to be loaded via this mode unless they are explicitly allowlisted by the user via `torch.serialization.add_safe_globals`. We recommend you start setting `weights_only=True` for any use case where you don't have full control of the loaded file. Please open an issue on GitHub for any issues related to this experimental feature. state = torch.load(file, map_location=device, **torch_load_kwargs)
In [ ]:
learn.fine_tune(5)
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.autocast(args...)` is deprecated. Please use `torch.amp.autocast('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.GradScaler(args...)` is deprecated. Please use `torch.amp.GradScaler('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
| epoch | train_loss | valid_loss | accuracy | f1_score | matthews_corrcoef | time |
|---|---|---|---|---|---|---|
| 0 | 0.399550 | 0.396732 | 0.992401 | 0.992382 | 0.989778 | 01:05 |
Better model found at epoch 0 with accuracy value: 0.9924012422561646.
/usr/local/lib/python3.10/dist-packages/fastai/learner.py:53: FutureWarning: You are using `torch.load` with `weights_only=False` (the current default value), which uses the default pickle module implicitly. It is possible to construct malicious pickle data which will execute arbitrary code during unpickling (See https://github.com/pytorch/pytorch/blob/main/SECURITY.md#untrusted-models for more details). In a future release, the default value for `weights_only` will be flipped to `True`. This limits the functions that could be executed during unpickling. Arbitrary objects will no longer be allowed to be loaded via this mode unless they are explicitly allowlisted by the user via `torch.serialization.add_safe_globals`. We recommend you start setting `weights_only=True` for any use case where you don't have full control of the loaded file. Please open an issue on GitHub for any issues related to this experimental feature.
state = torch.load(file, map_location=device, **torch_load_kwargs)
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.autocast(args...)` is deprecated. Please use `torch.amp.autocast('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.GradScaler(args...)` is deprecated. Please use `torch.amp.GradScaler('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
| epoch | train_loss | valid_loss | accuracy | f1_score | matthews_corrcoef | time |
|---|---|---|---|---|---|---|
| 0 | 0.387017 | 0.374555 | 0.993541 | 0.993526 | 0.991317 | 01:07 |
| 1 | 0.374103 | 0.366560 | 0.995061 | 0.995057 | 0.993350 | 01:14 |
| 2 | 0.366760 | 0.363650 | 0.996201 | 0.996198 | 0.994882 | 01:06 |
| 3 | 0.361920 | 0.362623 | 0.996201 | 0.996198 | 0.994882 | 01:08 |
| 4 | 0.359425 | 0.362494 | 0.996201 | 0.996198 | 0.994882 | 01:03 |
Better model found at epoch 0 with accuracy value: 0.9935410618782043.
Better model found at epoch 1 with accuracy value: 0.9950608015060425. Better model found at epoch 2 with accuracy value: 0.9962006211280823. No improvement since epoch 2: early stopping
/usr/local/lib/python3.10/dist-packages/fastai/learner.py:53: FutureWarning: You are using `torch.load` with `weights_only=False` (the current default value), which uses the default pickle module implicitly. It is possible to construct malicious pickle data which will execute arbitrary code during unpickling (See https://github.com/pytorch/pytorch/blob/main/SECURITY.md#untrusted-models for more details). In a future release, the default value for `weights_only` will be flipped to `True`. This limits the functions that could be executed during unpickling. Arbitrary objects will no longer be allowed to be loaded via this mode unless they are explicitly allowlisted by the user via `torch.serialization.add_safe_globals`. We recommend you start setting `weights_only=True` for any use case where you don't have full control of the loaded file. Please open an issue on GitHub for any issues related to this experimental feature. state = torch.load(file, map_location=device, **torch_load_kwargs)
In [ ]:
learn = learn.to_fp32()
learn.save(model_path/f'models/{plant}')
In [ ]:
model_path
Out[ ]:
Path('/content/PlantDiseasesDataset/Apple')
In [ ]:
learn = cnn_learner(dls, models.resnet50).load(model_path/f'models/model')
learn.summary()
/usr/local/lib/python3.10/dist-packages/fastai/learner.py:61: UserWarning: Saved file doesn't contain an optimizer state.
elif with_opt: warn("Saved file doesn't contain an optimizer state.")
Out[ ]:
Sequential (Input shape: 128 x 3 x 224 x 224)
============================================================================
Layer (type) Output Shape Param # Trainable
============================================================================
128 x 64 x 112 x 11
Conv2d 9408 False
BatchNorm2d 128 True
ReLU
____________________________________________________________________________
128 x 64 x 56 x 56
MaxPool2d
Conv2d 4096 False
BatchNorm2d 128 True
Conv2d 36864 False
BatchNorm2d 128 True
____________________________________________________________________________
128 x 256 x 56 x 56
Conv2d 16384 False
BatchNorm2d 512 True
ReLU
Conv2d 16384 False
BatchNorm2d 512 True
____________________________________________________________________________
128 x 64 x 56 x 56
Conv2d 16384 False
BatchNorm2d 128 True
Conv2d 36864 False
BatchNorm2d 128 True
____________________________________________________________________________
128 x 256 x 56 x 56
Conv2d 16384 False
BatchNorm2d 512 True
ReLU
____________________________________________________________________________
128 x 64 x 56 x 56
Conv2d 16384 False
BatchNorm2d 128 True
Conv2d 36864 False
BatchNorm2d 128 True
____________________________________________________________________________
128 x 256 x 56 x 56
Conv2d 16384 False
BatchNorm2d 512 True
ReLU
____________________________________________________________________________
128 x 128 x 56 x 56
Conv2d 32768 False
BatchNorm2d 256 True
____________________________________________________________________________
128 x 128 x 28 x 28
Conv2d 147456 False
BatchNorm2d 256 True
____________________________________________________________________________
128 x 512 x 28 x 28
Conv2d 65536 False
BatchNorm2d 1024 True
ReLU
Conv2d 131072 False
BatchNorm2d 1024 True
____________________________________________________________________________
128 x 128 x 28 x 28
Conv2d 65536 False
BatchNorm2d 256 True
Conv2d 147456 False
BatchNorm2d 256 True
____________________________________________________________________________
128 x 512 x 28 x 28
Conv2d 65536 False
BatchNorm2d 1024 True
ReLU
____________________________________________________________________________
128 x 128 x 28 x 28
Conv2d 65536 False
BatchNorm2d 256 True
Conv2d 147456 False
BatchNorm2d 256 True
____________________________________________________________________________
128 x 512 x 28 x 28
Conv2d 65536 False
BatchNorm2d 1024 True
ReLU
____________________________________________________________________________
128 x 128 x 28 x 28
Conv2d 65536 False
BatchNorm2d 256 True
Conv2d 147456 False
BatchNorm2d 256 True
____________________________________________________________________________
128 x 512 x 28 x 28
Conv2d 65536 False
BatchNorm2d 1024 True
ReLU
____________________________________________________________________________
128 x 256 x 28 x 28
Conv2d 131072 False
BatchNorm2d 512 True
____________________________________________________________________________
128 x 256 x 14 x 14
Conv2d 589824 False
BatchNorm2d 512 True
____________________________________________________________________________
128 x 1024 x 14 x 1
Conv2d 262144 False
BatchNorm2d 2048 True
ReLU
Conv2d 524288 False
BatchNorm2d 2048 True
____________________________________________________________________________
128 x 256 x 14 x 14
Conv2d 262144 False
BatchNorm2d 512 True
Conv2d 589824 False
BatchNorm2d 512 True
____________________________________________________________________________
128 x 1024 x 14 x 1
Conv2d 262144 False
BatchNorm2d 2048 True
ReLU
____________________________________________________________________________
128 x 256 x 14 x 14
Conv2d 262144 False
BatchNorm2d 512 True
Conv2d 589824 False
BatchNorm2d 512 True
____________________________________________________________________________
128 x 1024 x 14 x 1
Conv2d 262144 False
BatchNorm2d 2048 True
ReLU
____________________________________________________________________________
128 x 256 x 14 x 14
Conv2d 262144 False
BatchNorm2d 512 True
Conv2d 589824 False
BatchNorm2d 512 True
____________________________________________________________________________
128 x 1024 x 14 x 1
Conv2d 262144 False
BatchNorm2d 2048 True
ReLU
____________________________________________________________________________
128 x 256 x 14 x 14
Conv2d 262144 False
BatchNorm2d 512 True
Conv2d 589824 False
BatchNorm2d 512 True
____________________________________________________________________________
128 x 1024 x 14 x 1
Conv2d 262144 False
BatchNorm2d 2048 True
ReLU
____________________________________________________________________________
128 x 256 x 14 x 14
Conv2d 262144 False
BatchNorm2d 512 True
Conv2d 589824 False
BatchNorm2d 512 True
____________________________________________________________________________
128 x 1024 x 14 x 1
Conv2d 262144 False
BatchNorm2d 2048 True
ReLU
____________________________________________________________________________
128 x 512 x 14 x 14
Conv2d 524288 False
BatchNorm2d 1024 True
____________________________________________________________________________
128 x 512 x 7 x 7
Conv2d 2359296 False
BatchNorm2d 1024 True
____________________________________________________________________________
128 x 2048 x 7 x 7
Conv2d 1048576 False
BatchNorm2d 4096 True
ReLU
Conv2d 2097152 False
BatchNorm2d 4096 True
____________________________________________________________________________
128 x 512 x 7 x 7
Conv2d 1048576 False
BatchNorm2d 1024 True
Conv2d 2359296 False
BatchNorm2d 1024 True
____________________________________________________________________________
128 x 2048 x 7 x 7
Conv2d 1048576 False
BatchNorm2d 4096 True
ReLU
____________________________________________________________________________
128 x 512 x 7 x 7
Conv2d 1048576 False
BatchNorm2d 1024 True
Conv2d 2359296 False
BatchNorm2d 1024 True
____________________________________________________________________________
128 x 2048 x 7 x 7
Conv2d 1048576 False
BatchNorm2d 4096 True
ReLU
____________________________________________________________________________
128 x 2048 x 1 x 1
AdaptiveAvgPool2d
AdaptiveMaxPool2d
____________________________________________________________________________
128 x 4096
Flatten
BatchNorm1d 8192 True
Dropout
____________________________________________________________________________
128 x 512
Linear 2097152 True
ReLU
BatchNorm1d 1024 True
Dropout
____________________________________________________________________________
128 x 4
Linear 2048 True
____________________________________________________________________________
Total params: 25,616,448
Total trainable params: 2,161,536
Total non-trainable params: 23,454,912
Optimizer used: <function Adam at 0x7bd0eb733ac0>
Loss function: FlattenedLoss of CrossEntropyLoss()
Model frozen up to parameter group #2
Callbacks:
- TrainEvalCallback
- CastToTensor
- Recorder
- ProgressCallback
In [ ]:
learn.show_results(max_n=16)
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.autocast(args...)` is deprecated. Please use `torch.amp.autocast('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.GradScaler(args...)` is deprecated. Please use `torch.amp.GradScaler('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
In [ ]:
interp = ClassificationInterpretation.from_learner(learn)
losses,idxs = interp.top_losses()
interp.plot_confusion_matrix(figsize=(12,12))
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.autocast(args...)` is deprecated. Please use `torch.amp.autocast('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.GradScaler(args...)` is deprecated. Please use `torch.amp.GradScaler('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.autocast(args...)` is deprecated. Please use `torch.amp.autocast('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
/usr/local/lib/python3.10/dist-packages/fastai/callback/fp16.py:47: FutureWarning: `torch.cuda.amp.GradScaler(args...)` is deprecated. Please use `torch.amp.GradScaler('cuda', args...)` instead.
self.autocast,self.learn.scaler,self.scales = autocast(dtype=dtype),GradScaler(**self.kwargs),L()
In [ ]:
learn.export(f'{plant}.pkl')
In [ ]: